The Adaptive Laboratory Evolution Database. ALEdb reports acquired mutations and experimental conditions, supports mutation cross-reference/search, exports, and includes a publication bibliome across multiple model organisms.

Genes Strains Mutations

BiGGr Models is a knowledgebase of genome-scale metabolic network reconstructions and an evolution of BiGG Models. BiGGr hosts genome-scale metabolic models, linking genes to metabolic reactions and enabling constraint-based modeling of microbial metabolism.

Genes Strains Metabolic Models

The Pangenome Knowledge Base. PanKB is an interactive microbial pangenome knowledgebase with pangenome analytics, alleleomes, gene annotation tables, phylogenetic views and a Retrieval-Augmented Generation function over a bibliome of open-access pangenomic publications.

Genes Strains Pangenomics

The Phenotype MicroArray Knowledge Base. PMkbase is built on BiOLOG Phenotype MicroArray data, using a workflow of curation, quality check, kinetic parameter extraction, and growth/no-growth calls to track strain traits alongside sequences.

Strains Phenotypes